A program written in C that can perform genomic scans for adaptive introgression using a composite likelihood ratio test.

Please cite the following manuscript if using this software:
M Setter, S Mousset, X Cheng, R Nielsen, M DeGiorgio, J Hermisson (2019) VolcanoFinder: genomic scans for adaptive introgression. bioRxiv doi.org/10.1101/697987

[Click to download manual]
[Click to download software]

On a Linux system, extract the compressed files using the command
tar -xzvf volcanofinder_v1.0.tar.gz
Change directory to volcanofinder_v1.0 using a command such as
cd volcanofinder_v1.0
Compile VolcanoFinder with the command
The VolcanoFinder executable will be located in the volvanofinder_v1.0 directory

Note:VolcanoFinder should run on a Linux system. We are working to extend this functionality to other Unix-based systems for the future. As an example, on some Mac systems, running VolcanoFinder can return an error on some inputs, yet we have not found these errors reproducible on Linux systems. We are working to resolve such issues.

Software history
March 22, 2019 - Uploaded version 1.0 of the software and manual
March 27, 2019 - Updated software and manual to allow for pre-computed lookup table of probabilities
April 11, 2019 - Updated software and manual to allow for user-defined grid of D, and fixed issues with grid of D values for Model 2 and issues with blocks
April 12, 2019 - Updated software to fix issue with lower-bound on D
July 5, 2019 - Updated software to account for polarization of fixed differences
February 24, 2020 - Updated manual