LASSI (Likelhood-based Approach for Selective Sweep Inference)
A Python script that implements the likelihood ratio T statistic of Harris and DeGiorgio (2020) for detecting selective sweeps and inferring their softness.

Data associated with this Harris and DeGiorgio (2020).

Please cite the following manuscript if using this software:
AM Harris, M DeGiorgio (2020) A likelihood approach for uncovering selective sweep signatures from haplotype data. Molecular Biology and Evolution

[Click to download manual]
[Click to download software]

On a UNIX system, extract the compressed files using the command
tar -xzvf LASSI_program_071019.tar.gz
Change directory to LASSI_program_071019 using a command such as
cd LASSI_program_071019
The script will be located in the LASSI_program_071019 directory

Software history
June 20, 2019 - Uploaded version 1.0 of the software and manual
July 10, 2019 - Made minor update to package