† indicates corresponding author
Underline indicates DeGiorgio group member
Journal publications
- A tale of too many trees: a conundrum for phylogenetic regression
RH Adams†, JR Lozano, M Duncan, J Green, R Assis*, M DeGiorgio*
Molecular Biology and Evolution msaf032 (2025)
- TraitTrainR: Accelerating large-scale simulation under models of trait evolution
JR Lozano, M Duncan, DD McKenna, T Castoe, M DeGiorgio, RH Adams†
Bioinformatics Advances 5:vbae196 (2025)
- Digital image processing to detect adaptive evolution
MR Amin*, M Hasan*, M DeGiorgio†
Molecular Biology and Evolution 41:msae242 (2024)
- Genomic analyses correspond with deep persistence of peoples of Blackfoot Confederacy from glacial times
D First Rider, A Crop Eared Wolf, J Murray, A de Flamingh, AL Campelo dos Santos, F Lanoë, MN Zedoño, M DeGiorgio†, J Lindo†, RS Malhi†
Science Advances 10:eadl6595 (2024)
- Predicting evolutionary targets and parameters of gene deletion from expression data
AL Campelo dos Santos†, M DeGiorgio*, R Assis*
Bioinformatics Advances 4:vbae002 (2024)
- Robust phylogenetic regression
RH Adams†, Z Cain, R Assis*, M DeGiorgio*
Systematic Biology 73:140-157 (2023)
- Tensor decomposition based feature extraction and classification to detect natural selection from genomic data
MR Amin†, M Hasan, SP Arnab, M DeGiorgio†
Molecular Biology and Evolution 40:msad216 (2023)
- Likelihood-based tests of species trees
RH Adams†, M DeGiorgio†
Molecular Biology and Evolution 40:msad159 (2023)
- Uncovering footprints of natural selection through spectral analysis of genomic summary statistics
SP Arnab†, MR Amin, M DeGiorgio†
Molecular Biology and Evolution 40:msad157 (2023)
- Predicting expression divergence between single-copy orthologs in two species
AA Piya, M DeGiorgio, R Assis†
Genome Biology and Evolution 15:evad078 (2023)
- Genomic evidence for adaptation to tuberculosis in the Andes before European contact
SK Joseph, NR Migliore, A Olivieri, A Torroni, AC Owings, M DeGiorgio, WG Ordóñez, JJO Aguilú, F González-Andrade†, A Achilli†, J Lindo†
iScience 26:106034 (2023)
- Spatiotemporal fluctuations of population structure in the Americas revealed by a meta-analysis of the first decade of archaeogenomes
AL Campelo dos Santos†, HSL Sullasi, O Gokcumen, J Lindo†, M DeGiorgio†
American Journal of Biological Anthropology 180:703-714 (2023)
- Genomic evidence for ancient human migration routes along South America's Altantic coast
AL Campelo dos Santos†, A Owings, HSL Sullasi, O Gokcumen, M DeGiorgio†, J Lindo†
Proceedings of the Royal Society B: Biological Sciences 289:20221078 (2022)
- The roles of balancing selection and recombination in the evolution of rattlesnake venom
DR Schield†, BW Perry, RH Adams, ML Holding, ZL Nikolakis, SS Gopalan, CF Smith, JM Parker, JM Meik, M DeGiorgio, SP Mackessy, TA Castoe†
Nature Ecology and Evolution 6:1367-1380 (2022)
- The genomic prehistory of the Indigenous people of Uruguay
J Lindo†, R De La Rosa, AL Campelo dos Santos, M Sans, M DeGiorgio, G Figueiro†
PNAS Nexus 1:pgac047 (2022)
- A spatially aware likelihood test to detect sweeps from haplotype distributions
M DeGiorgio†, ZA Szpiech†
PLoS Genetics 18:e1010134 (2022)
- Ancient and modern genomics of the Ohlone Indigenous population of California
AL Severson, BF Byrd, EK Mallott, AC Owings, M DeGiorgio, A de Flamingh, C Nijmeh, MV Arellano, A Leventhal, NA Rosenberg†, RS Malhi†
Proceedings of the National Academy of Sciences of the United States of America 119:e2111533119 (2022)
- BalLeRMix+: Mixture model approaches for robust joint identification of both positive selection and long-term balancing selection
X Cheng†, M DeGiorgio†
Bioinformatics 38:861-863 (2022)
- Properties and unbiased estimation of F- and D-statistics in samples containing related and inbred individuals
MR Mughal†, M DeGiorgio†
Genetics 220:iyab090 (2021)
- Selection and thermostability suggest G-quadruplexes are novel functional elements of the human genome
WM Guiblet, M DeGiorgio, X Cheng, F Chiaromonte, KA Eckert, Y-F Huang†, KD Makova†
Genome Research 31:1136-1149 (2021)
- Of traits and trees: probabilistic distances under continuous trait models for dissecting the interplay among phylogeny, model, and data
RH Adams, H Blackmon, M DeGiorgio†
Systematic Biology 70:660-680 (2021)
- PhyloWGA: chromosome-aware phylogenetic interrogation of whole genome alignments
RH Adams†, TA Castoe, M DeGiorgio†
Bioinformatics 37:1923-1925 (2021)
- Learning retention mechanisms and evolutionary parameters of duplicate genes from their expression data
M DeGiorgio†, R Assis†
Molecular Biology and Evolution 38:1209-1224 (2021)
- Understanding the adaptive evolutionary history of South American ancient and modern populations via genomics
J Lindo†, M DeGiorgio†
Genes 12:360 (2021)
- Learning the properties of adaptive regions with functional data analysis
MR Mughal†, H Koch, J Huang, F Chiaromonte, M DeGiorgio†
PLoS Genetics 16:e1008896 (2020)
- VolcanoFinder: genomic scans for adaptive introgression
D Setter*, S Mousset*, X Cheng, R Nielsen, M DeGiorgio†, J Hermisson†
PLoS Genetics 16:e1008867 (2020)
- Flexible mixture model approaches that accommodate footprint size variability for robust detection of balancing selection
X Cheng, M DeGiorgio†
Molecular Biology and Evolution 37:3267-3291 (2020)
- A likelihood approach for uncovering selective sweep signatures from haplotype data
AM Harris, M DeGiorgio†
Molecular Biology and Evolution 37:3023-3046 (2020)
- Ampliconic genes on the great ape Y chromosomes: Rapid evolution of copy number but conservation of expression levels
R Vegesna, M Tomaszkiewicz, OA Ryder, R Campos-Sánchez, P Medvedev, M DeGiorgio†, KD Makova†
Genome Biology and Evolution 12:842-859 (2020)
- Identifying and classifying shared selective sweeps from multilocus data
AM Harris, M DeGiorgio†
Genetics 215:143-171 (2020)
- Maximum likelihood estimation of species trees from gene trees in the presence of ancestral population structure
H Koch, M DeGiorgio†
Genome Biology and Evolution 12:3977-3995 (2020)
- A high resolution view of adaptive events in a plasmid
H Mei, B Arbeithuber, MA Cremona, M DeGiorgio, A Nekrutenko
Genome Biology and Evolution 11:3022-3034 (2019)
- Large-scale whole-genome sequencing of three diverse Asian populations in Singapore
D Wu, J Dou, X Chai, C Bellis, A Wilm, CC Shih, WWJ Soon, N Bertin, CB Lin, CC Khor, M DeGiorgio, S Cheng, L Bao, N Karnani, WYK Hwang, S Davila, P Tan, A Shabbir, A Moh, E-K Tan, JN Foo, LL Goh, KP Leong, RSY Foo, CSP Lam, AM Richards, C-Y Cheng, T Aung, TY Wong, HK Ng, SG10K Consortium
Cell 3:736-749 (2019)
- Localizing and classifying adaptive targets with trend filtered regression
MR Mughal, M DeGiorgio†
Molecular Biology and Evolution 36:252-270 (2019)
- Detection of shared balancing selection in the absence of trans-species polymorphism
X Cheng, M DeGiorgio†
Molecular Biology and Evolution 36:177-199 (2019)
- Detection and classification of hard and soft sweeps from unphased genotypes by multilocus genotype identity
AM Harris, NR Garud, M DeGiorgio†
Genetics 210:1419-1452 (2018)
- High levels of copy number variation of ampliconic genes across major human Y haplogroups
D Ye, A Zaidi, M Tomaszkiewicz, K Anthony, C Liebowitz, M DeGiorgio, MD Shriver, KD Makova
Genome Biology and Evolution 10:1333-1350 (2018)
- Patterns of genetic coding variation in a Native American population before and after European contact
J Lindo, M Rogers, EK Mallot, B Petzelt, J Mitchell, D Archer, JS Cybulski, RS Malhi†, M DeGiorgio†
American Journal of Human Genetics 102:806-815 (2018)
- Fast and robust detection of ancestral selective sweeps
X Cheng, C Xu, M DeGiorgio†
Molecular Ecology 26:6871-6891 (2017)
- Archaic hominin introgression in Africa contributes to functional salivary MUC7 genetic variation
D Xu, P Pavlidis, RO Taskent, N Alachiotis, C Flanagan, M DeGiorgio, R Blekhman, S Ruhl, O Gokcumen
Molecular Biology and Evolution 34:2704-2715 (2017)
- Admixture and ancestry inference from ancient and modern samples through measures of population genetic drift
AM Harris, M DeGiorgio†
Human Biology 89:1 (2017)
- Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity
J Lindo, A Achilli, D Archer, C Valdiosera, B Petzelt, J Mitchell, R Worl, EJ Dixon, T Fifield, M Rasmussen, E Willerslev, J Cybulski, B Kemp†, M DeGiorgio†, RS Malhi†
Proceedings of the National Academy of Sciences of the United States of America 114:4093-4098 (2017)
- An unbiased estimator of gene diversity with improved variance for samples containing related and inbred individuals of any ploidy
AM Harris, M DeGiorgio†
G3: Genes, Genomes, Genetics 7:671-691 (2017)
- Empty niches after extinctions increase population sizes of modern corals
C Prada†, B Hanna, AF Budd, C Woodley, J Schmutz, J Grimwood, R Iglesias-Prieto, JM Pandolfi, D Levitan, N Knowlton, H Kitano, M DeGiorgio†*, M Medina†*
Current Biology 26:1-5 (2016)
- A time transect of exomes from a Native American population before and after European contact
J Lindo, E Huerta-Sánchez, S Nakagome, M Rasmussen, B Petzelt, J Mitchell, JS Cybulski, E Willerslev, M DeGiorgio†, RS Malhi†
Nature Communications 7:13175 (2016)
- Genomic analyses inform on migration events during the peopling of Eurasia
L Pagani, DJ Lawson, E Jagoda, A Mörseburg, A Eriksson, M Mitt, F Clemente, G Hudjashov, M DeGiorgio, L Saag, JD Wall, A Cardona, R Mägi, MA Wilson Sayres, S Kaewert, C Inchley, CL Scheib, M Järve, M Karmin, GS Jacobs, T Antao, FM Iliescu, A Kushniarevich, Q Ayub, C Tyler-Smith, Y Xue, B Yunusbayev, K Tambets, CB Mallick, L Saag, E Pocheshkhova, G Andriadze, C Muller, MC Westaway, DM Lambert, G Zoraqi, S Turdikulova, D Dalimova, Z Sabitov, GNN Sultana, J Lachance, S Tishkoff, K Momynaliev, J Isakova, LD Damba, M Gubina, P Nymadawa, I Evseeva, L Atramentova, O Utevska, F-X Ricaut, N Brucato, H Sudoyo, T Letellier, MP Cox, NA Barashkov, V Skaro, L Mulahasanovic, D Primorac, H Sahakyan, M Mormina, CA Eichstaedt, DV Lichman, S Abdullah, G Chaubey, JTS Wee, E Mihailov, A Karunas, S Litvinov, R Khusainova, N Ekomasova, V Akhmetova, I Khidiyatova, D Marjanović, L Yepiskoposyan, DM Behar, E Balanovska, A Metspalu, M Derenko, B Malyarchuk, M Voevoda, SA Fedorova, LP Osipova, MM Lahr, P Gerbault, M Leavesley, AB Migliano, M Petraglia, O Balanovsky, EK Khusnutdinova, E Metspalu, MG Thomas, A Manica, R Nielsen, R Villems, E Willerslev, T Kivisild, M Metspalu
Nature 538:238-242 (2016)
- Reverse transcription errors and RNA-DNA differences at short tandem repeats
A Fungtammasan, M Tomaszkiewicz, R Campos-Sanchez, K Eckert, M DeGiorgio†, KD Makova†
Molecular Biology and Evolution 33:2744-2758 (2016)
- Consistency and inconsistency of consensus methods for inferring species trees from gene trees in the presence of ancestral population structure
M DeGiorgio†, NA Rosenberg
Theoretical Population Biology 110:12-24 (2016)
- SweepFinder2: Increased sensitivity, robustness, and flexibility
M DeGiorgio†, CD Huber, MJ Hubisz, I Hellmann, R Nielsen
Bioinformatics 32:1895-1897 (2016)
- Detecting recent selective sweeps while controlling for mutation rate and background selection
CD Huber, M DeGiorgio, I Hellmann, R Nielsen
Molecular Ecology 25:142-156 (2015)
- Genomic evidence for the Pleistocene and recent population history of Native Americans
M Raghavan*, M Steinrücken*, K Harris*, S Schiffels*, S Rasmussen*, M DeGiorgio*, A Albrechtsen*, C Valdiosera*, MC Ávila-Arcos*, A-S Malaspinas*, A Eriksson, I Moltke, M Metspalu, JR Homburger, J Wall, OE Cornejo, JV Moreno-Mayar, TS Korneliussen, T Pierre, M Rasmussen, PF Campos, P de Barros Damgaard, ME Allentoft, J Lindo, E Metspalu, R Rodríguez-Varela, J Mansilla, C Henrickson, A Siguin-Orlando, H Malmström, T Safford Jr, SS Shingarpure, A Moreno-Esrada, M Karmin, K Tambets, A Bergström, Y Xue, V Warmuth, A Friend, J Singarayer, P Valdes, F Balloux, I Leboreiro, JL Vera, H Rangel-Villalobos, D Pettener, D Luiselli, LG Davis, E Heyer, CPE Zollikofer, MS Ponce de León, CI Smith, V Grimes, K-A Pike, M Deal, BT Fuller, B Arriaza, V Standen, MF Luz, F Ricaut, N Guidon, L Osipova, MI Voevoda, OL Posukh, O Balanovsky, M Lavryashina, Y Bogunov, E Khusnutdinova, M Gubina, E Balanovska, S Fedorova, S Litvinov, B Malyarchuk, M Derenko, MJ Mosher, D Archer, J Cybulski, B Petzelt, J Mitchell, R World, PJ Norman, P Parham, BM Kemp, T Kivisild, C Tyler-Smith, MS Sandhu, M Crawford, R Villems, DG Smith, MR Waters, T Goebel, JR Johnson, RS Malhi, M Jakobsson, DJ Meltzer, A Manica, R Durbin, CD Bustamante, YS Song, R Nielsen, E Willerslev
Science 349:aab3884 (2015)
- A recent bottleneck of Y chromosome diversity coincides with a global change in culture
M Karmin, L Saag, M Vicente, MA Wilson Sayres, M Järve, U Gerst Talas, S Rootsi, A-M Ilumäe, R Mägi, M Mitt, L Pagani, T Puurand, Z Faltyskova, F Clemente, A Cardona, E Metspalu, H Sahakyan, B Yunusbayev, G Hudjashov, M DeGiorgio, E-L Loogväli, C Eichstaedt, M Eelmets, G Chaubey, K Tambets, S Litvinov, M Mormina, Y Xue, Q Ayub, G Zoraqi, T Sand Korneliussen, F Akhatova, J Lachance, S Tishkoff, K Momynaliev, F-X Ricaut, P Kusuma, H Razafindrazaka, D Pierron, MP Cox, G Nurun Nahar Sultana, R Willerslev, C Muller, M Westaway, D Lambert, V Skaro, L Kovacevic, S Turdikulova, D Dalimova, R Khusainova, N Trofimova, V Akhmetova, I Khidiyatova, DV Lichman, J Isakova, E Pocheshkhova, Z Sabitov, NA Barashkov, P Nymadawa, E Mihailov, J Wee Tien Seng, I Evseeva, A Bamberg Migliano, S Abdullah, G Andriadze, D Primorac, L Atramentova, O Utevska, L Yepiskoposyan, D Marjanovic, A Kushniarevich, DM Behar, C Gilissen, L Vissers, JA Veltman, E Balanovska, M Derenko, B Malyarchuk, A Metspalu, S Fedorova, A Eriksson, A Manica, FL Mendez, TM Karafet, KR Veeramah, NBradman, MF Hammer, LP Osipova, O Balanovsky, EK Khusnutdinova, K Johnsen, M Remm, MG Thomas, C Tyler-Smith, PA Underhill, E Willerslev, R Nielsen, M Metspalu, R Villems, T Kivisild
Genome Research 24:459-466 (2015)
- Computational and statistical analyses of insertional polymorphic endogenous retroviruses in a non-model organism
L Bao, D Elleder, R Malhotra, M DeGiorgio, T Maravegias, L Horvath, L Carrel, C Gillin, T Hron, H Fábryová, DR Hunter, M Poss
Computation 2:221-245 (2014)
- A selective sweep on a deleterious mutation in CPT1A in Arctic populations
FJ Clemente, A Cardona, CE Inchley, BM Peter, G Jacobs, L Pagani, DJ Lawson, T Antão, M Vicente, M Mitt, M DeGiorgio, Z Faltyskova, Y Xue, Q Ayub, M Szpak, R Mägi, A Eriksson, A Manica, M Raghavan, M Rasmussen, S Rasmussen, E Willerslev, A Vidal-Puig, C Tyler-Smith, R Villems, R Nielsen, M Metspalu, B Malyarchuk, M Derenko, T Kivisild
American Journal of Human Genetics 95:584-589 (2014)
- Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil
A-S Malaspinas, O Lao, H Schroeder, M Rasmussen, M Raghavan, I Moltke, PF Campos, F Santana Sagredo, S Rasmussen, VF Gonçalves, A Albrechtsen, ME Allentoft, PLF Johnson, M Li, S Reis, DV Bernardo, M DeGiorgio, AT Duggan, M Bastos, Y Wang, J Stenderup, JV Moreno-Mayar, S Brunak, T Sicheritz-Ponten, E Hodges, GJ Hannon, L Orlando, TD Price, JD Jensen, R Nielsen, J Heinemeier, J Olsen, C Rodrigues-Carvalho, M Mirazón Lahr, WA Neves, M Kayser, T Higham, M Stoneking, SDJ Pena, E Willerslev
Current Biology 24:R1035-R1037 (2014)
- The genetic prehistory of the New World Arctic
M Raghavan, M DeGiorgio, A Albrechtsen, I Moltke, P Skogland, TS Korneliussen, B Grønnow, M Appelt, H Christian Gulløv, TM Friesen, W Fitzhugh, H Malmström, S Rasmussen, J Olsen, L Melchior, BT Fuller, SM Fahrni, T Stafford Jr, V Grimes, MAP Renouf, J Cybulski, N Lynnerup, M Mirazon Lahr, K Britton, R Knecht, J Arneborg, M Metspalu, OE Cornejo, A-S Malaspinas, Y Wang, M Rasmussen, V Raghavan, TVO Hansen, E Khusnutdinova, T Pierre, K Dneprovsky, C Andreasen, H Lange, MG Hayes, J Coltrain, VA Spitsyn, A Götherström, L Orlando, T Kivisild, R Villems, MH Crawford, FC Nielsen, J Dissing, J Heinemeier, M Meldgaard, C Bustamante, DH O'Rourke, M Jakobsson, MTP Gilbert, R Nielsen, E Willerslev
Science 345: 345:1255832 (2014)
- A model-based approach for identifying signatures of ancient balancing selection in genetic data
M DeGiorgio†, KE Lohmueller, R Nielsen
PLoS Genetics 10:e1004561 (2014)
- bammds: A tool for assessing the ancestry of low depth whole genome data using multidimensional scaling (MDS)
A-S Malaspinas, O Tange, JV Moreno-Mayar, M Rasmussen, M DeGiorgio, Y Wang, CE Valdiosera, G Politis, E Willerslev, R Nielsen
Bioinformatics 30:2962-2964 (2014)
- An empirical evaluation of two-stage species tree inference strategies using a multilocus dataset from North American pines
M DeGiorgio†, J Syring, AJ Eckert, A Liston, R Cronn, DB Neale, NA Rosenberg
BMC Evolutionary Biology 14:67 (2014)
- Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European
I Olalde, ME Allentoft, F Sánchez-Quinto, G Santpere, CWK Chiang, M DeGiorgio, J Prado-Martínez, JA Rodríguez, S Rasmussen, J Quilez, O Ramírez, M Fernández, ME Prada, JMV Encinas, R Nielsen, MG Netea, J Novembre, RA Sturm, P Sabeti, T Marquès-Bonet, A Navarro, E Willerslev, C Lalueza-Fox
Nature 507:225-228 (2014)
- The genome of a late Pleistocene human found at a Clovis burial site in western Montana
M Rasmussen, SL Anzick, MR Waters, P Skoglund, M DeGiorgio, TW Stafford Jr, S Rasmussen, I Moltke, A Albrechtsen, SM Doyle, GD Poznik, V Gudmundsdottir, R Yadav, A-S Malaspinas, SS White V, M Allentoft, OE Cornejo, K Tambets, A Eriksson, P Heintzman, M Meiri, M Karmin, T Sand Korneliussen, TL Pierre, J Stenderup, L Saag, V Warmuth, M Cabrita Lopes, S Brunak, T Sicheritz-Ponten, I Barnes, M Collins, L Orlando, F Balloux, A Manica, M Metspalu, CD Bustamante, M Jakobsson, R Gupta, R Nielsen, E Willerslev
Nature 506:225-229 (2014)
- Robustness to divergence time underestimation when inferring species trees from estimated gene trees
M DeGiorgio, JH Degnan
Systematic Biology 63:66-82 (2014)
- Upper Paleolithic Siberian genome reveals dual ancestry of Native Americans
M Raghavan, P Skoglund, KE Graf, M Metspalu, A Albrechtsen, I Moltke, S Rasmussen, TW Stafford Jr, L Orlando, E Metspalu, M Karmin, K Tambets, S Rootsi, R Mägi, PF Campos, E Balanovska, O Balanovsky, E Khusnutdinova, S Litvinov, LP Osipova, SA Fedorova, MI Voevoda, M DeGiorgio, T Sicheritz-Ponten, S Brunak, S Demeshchenko, T Kivisild, R Villems, R Nielsen, M Jakobsson, E Willerslev
Nature 505:87-91 (2014)
- Whole-exome sequencing of 2,000 Danish individuals and the role of rare coding variants in type 2 diabetes
KE Lohmueller, T Sparsø, Q Li, E Andersson, T Korneliussen, A Albrechtsen, K Banasik, N Grarup, I Hallgrimsdottir, K Kiil, TO Kilpeläinen, NT Krarup, TH Pers, G Sanchez, Y Hu, M DeGiorgio, T Jørgensen, A Sandbæk, T Lauritzen, S Brunak, K Kristiansen, Y Li, T Hansen, J Wang, R Nielsen, O Pedersen
American Journal of Human Genetics 93:1072-1086 (2013)
- Genetic signatures reveal high-altitude adaptation in a set of Ethiopian populations
E Huerta-Sánchez*†, M DeGiorgio*†, L Pagani*, A Tarekegn, R Ekong, T Antao, A Cardona, HE Montgomery, GL Cavalleri, PA Robbins, ME Weale, N Bradman, E Bekele, T Kivisild, C Tyler-Smith, R Nielsen
Molecular Biology and Evolution 30:1877-1888 (2013)
- Population structure in a comprehensive data set on human microsatellite variation
TJ Pemberton, M DeGiorgio, NA Rosenberg
G3: Genes, Genomes, Genetics 3:909-916 (2013)
- Geographic sampling scheme as a determinant of the major axis of genetic variation in principal components analysis
M DeGiorgio†, NA Rosenberg
Molecular Biology and Evolution 30:480-488 (2013)
- Coalescence-time distributions in a serial founder model of human evolutionary history
M DeGiorgio†, JH Degnan, NA Rosenberg
Genetics 189:579-593 (2011)
- Unbiased estimation of gene diversity in samples containing related individuals: exact variance and arbitrary ploidy
M DeGiorgio*†, I Jankovic*, NA Rosenberg
Genetics 186:1367-1387 (2010)
- Fast and consistent estimation of species trees using supermatrix rooted triples
M DeGiorgio†, JH Degnan†
Molecular Biology and Evolution 27:552-659 (2010)
- Explaining worldwide patterns of human genetic variation using a coalescent-based serial founder model of migration outward from Africa
M DeGiorgio, M Jakobsson, NA Rosenberg
Proceedings of the National Academy of Sciences of the United States of America 106:16057-16062 (2009)
- Properties of consensus methods for inferring species trees from gene trees
JH Degnan, M DeGiorgio, D Bryant, NA Rosenberg
Systematic Biology 58:35-54 (2009)
- An unbiased estimator of gene diversity in samples containing related individuals
M DeGiorgio†, NA Rosenberg
Molecular Biology and Evolution 26:501-512 (2009) - TraitTrainR: Accelerating large-scale simulation under models of trait evolution